PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007527P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 240aa    MW: 24540.3 Da    PI: 8.3343
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007527P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-382787262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  MELO3C007527P1 27 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 87
                    57889****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-29285IPR003851Zinc finger, Dof-type
PfamPF027012.1E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2643185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPSDAGDHRK APTKPLASGS GVCPPPEQEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS  60
CRRYWTHGGT LRDIPVGGGS RKNAKRSRTC IPASAAIVSS SSSGSFSNSA SRMDHHPLPA  120
TPVLVPLGGG VGGDLKVGGG NMCGSITSLL NTHAPGFWSL GGFGLGLGSG FEDVGYGAAS  180
SRVAWPFLGL GDGGAGVGGH GGTPNTWQFE NGDAAGFVGS ADCLSWPELA ISTPGNGLK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440229.11e-174PREDICTED: dof zinc finger protein DOF3.4
SwissprotQ9FGD61e-57DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLA0A0A0KG501e-120A0A0A0KG50_CUCSA; Uncharacterized protein
STRINGPOPTR_0007s11790.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.16e-50OBF binding protein 1